CS3 Prefs'

Which particular preferences are you talking about? And do they all reset back to the default or just some of them?
 
That's very odd. I wonder where CS3 is writing those preferences and if something you are inadvertently doing happens to overwrite them or cause them to reset.

I'll see if I can dig something up for you.
 
I've got good news and bad news.

The good news is that I've had a brainwave. CS3 will be writing your preferences to a master file that it loads on startup and uses to arrange your workspace, set your preferences, etc. If this is corrupted it would explain the issues you are having.

The bad news is that I'm still trying to figure out where that might be.
 
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