It's definitely worth the effort. My first few attempts with a Cokin filter on my Nikon D90 were absolutely hopeless, and didn't get better quickly! It took a year (of barely using it because I thought it was hopeless!) before I got usable results. These photo were taken with a Cokin filter, and though you can't see it, the bridge one does have a hotspot in the middle, which I corrected using a reversed centre filter in PS. (Handy hint for Cokin filters - you can reduce light leakage by sliding the filter into the extreme inside gap - it's not a slot, but it can take a filter if you sand off the bits that stick out at the top and bottom).
[url=https://flic.kr/p/ebheZv]
Viaduct IR by
Scotty Rae, on Flickr[/URL]
Neidpath Castle by
Scotty Rae, on Flickr
Neidpath Castle by
Scotty Rae, on Flickr
I moved on to a Hoya R72, which had it's own learning curve but gave far more predictable and cleaner results and was worth the investment!
[url=https://flic.kr/p/dUjZSH]
Peebles 2012 033 by
Scotty Rae, on Flickr[/URL]
and a rubbish false colour conversion with a corrected hotspot again
Devon landscape by
Scotty Rae, on Flickr
Taking a photo on an unconverted camera requires patience and a workflow. You won't be able to see through the viewfinder, so you'll have to compose (and possibly set focus to manual once focused as AF might not work, although it always did for me), 30 second exposure at F9 would give a good exposure on a D90 in most weathers. Obviously that long an exposure will blur any moving object - great for clouds, rivers and getting rid of people! I really should have, but never set a custom white balance, and chose to do that in post processing. The problem is that Photoshop can't set a low enough white balance for IR, hence the fact I tend to convert to B&W rather than do false colour, however there are software tools (Nikon Capture for example) that will give you a low enough white balance, but it's then tricky to channel swap!) I always used to forget to cover the viewfinder - not a massive issue on the D90, but on the D7100 it will destroy a picture!
Hotspots are definitely lens dependent and probably aperture dependent - the Nikon 18-105 was pretty bad, the Sigma 10-20 is hopeless, the Nikon 18-200 is awesome, as is the 70-300, etc.
Last year I decided that IR was my "thing" so converted my D90 to IR 720nm permanently, and upgraded to a D7100 for my normal work. Again, what a difference! No setup, no long exposures, being able to compose using the viewfinder, instant results, white balanced camera (although I still can't use Photoshop to do false colour as it doesn't recognise the custom WB as it's too low! but then I'm happy with B&W)
[url=https://flic.kr/p/g9v4F7]
Coniston Sunset in Infrared by
Scotty Rae, on Flickr[/URL]
[url=https://flic.kr/p/f4HynH]
Edinburgh Castle by
Scotty Rae, on Flickr[/URL]
More on my Flickr stream.