Initially I would pick a nice contrasty static object and see if the focus is OK, if so I would forget about it. If not you then need to calibrate. Generally I've found my Canon lenses haven't needed micro AF, only my 3rd party Sigma and Tamron ones so hopefully you will be fine
You might also find that slowing down the AF tracking speed helps with getting consistantely in focus shots when using AI Servo. This isn't the speed of AF but rather how quickly it looks to aquire another target and when set too fast makes things jumpy. I'm usually on the lowest or 2nd to lowest with both my 7D and 1DmkIII.